Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS15750

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
3,573,009	+				-0.5
3,573,009	+				+0.2
3,573,010	-				+0.4
3,573,250	-				-3.3
3,573,258	+				+0.6
3,573,438	+				-3.6
3,573,439	-				-0.9
3,573,678	+		BPHYT_RS15750	0.16	-2.1
3,573,679	-		BPHYT_RS15750	0.16	-0.5
3,573,738	+		BPHYT_RS15750	0.19	-2.1
3,573,738	+		BPHYT_RS15750	0.19	-2.6
3,573,738	+		BPHYT_RS15750	0.19	-3.2
3,573,738	+		BPHYT_RS15750	0.19	-1.4
3,573,739	-		BPHYT_RS15750	0.19	-3.9
3,573,739	-		BPHYT_RS15750	0.19	-4.0
3,573,739	-		BPHYT_RS15750	0.19	-1.7
3,573,916	-		BPHYT_RS15750	0.27	-2.9
3,574,194	+		BPHYT_RS15750	0.40	-0.6
3,574,195	-		BPHYT_RS15750	0.41	-2.5
3,574,243	-		BPHYT_RS15750	0.43	-1.8
3,574,243	-		BPHYT_RS15750	0.43	-1.8
3,574,350	+		BPHYT_RS15750	0.48	-2.5
3,574,971	+		BPHYT_RS15750	0.77	-2.9
3,575,074	-		BPHYT_RS15750	0.82	-1.2
3,575,370	+				-3.0
3,575,373	-				-0.6
3,575,445	+				-1.1
3,575,446	-				+0.3
3,575,446	-				-0.1
3,575,446	-				+0.2
3,575,652	-				+1.3
3,575,879	+		BPHYT_RS15755	0.49	-2.2
3,575,879	+		BPHYT_RS15755	0.49	-0.9
3,575,880	-		BPHYT_RS15755	0.50	+0.9
3,575,880	-		BPHYT_RS15755	0.50	+0.1
3,576,189	+				+0.1
3,576,200	+				+2.1