Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS15620

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
3,542,728	+		BPHYT_RS15615	0.22	-1.2
3,542,864	-		BPHYT_RS15615	0.36	-0.2
3,543,173	-		BPHYT_RS15615	0.68	+0.0
3,543,317	-		BPHYT_RS15615	0.83	-1.6
3,543,346	+		BPHYT_RS15615	0.86	-1.1
3,543,768	-		BPHYT_RS15620	0.63	-2.2
3,543,768	-		BPHYT_RS15620	0.63	-1.8
3,543,775	+		BPHYT_RS15620	0.65	+1.0
3,543,776	-		BPHYT_RS15620	0.65	-1.1
3,543,776	-		BPHYT_RS15620	0.65	+0.0
3,543,776	-		BPHYT_RS15620	0.65	-1.8
3,543,841	+				+0.3
3,543,841	+		BPHYT_RS15620	0.79	-2.0
3,543,842	-		BPHYT_RS15620	0.80	-1.8
3,544,029	-				-0.8
3,544,033	+				-0.6
3,544,034	-				+0.0
3,544,095	+				+0.6
3,544,095	+				+0.7
3,544,095	+				+0.0
3,544,095	+				+1.0
3,544,095	+				+0.5
3,544,095	+				+0.2
3,544,095	+				-0.3
3,544,095	+				-0.7
3,544,096	-				+2.5
3,544,096	-				+0.3
3,544,096	-				-1.2
3,544,096	-				-0.1
3,544,096	-				-1.6
3,544,097	+				-0.4
3,544,097	+				-0.0
3,544,097	+				+0.6
3,544,097	+				+1.9
3,544,097	+				-0.4
3,544,097	+				-0.0
3,544,097	+				+0.5
3,544,097	+				-2.0
3,544,098	-				+1.3
3,544,098	-				-1.1
3,544,098	-				-1.1
3,544,098	-				-0.5
3,544,098	-				+0.8
3,544,098	-				+0.4
3,544,098	-				+0.3
3,544,098	-				+0.5
3,544,098	-				-0.4
3,544,099	+				-0.3
3,544,100	-				-1.5
3,544,100	-				-1.8
3,544,100	-				-0.2
3,544,100	-				+0.8
3,544,100	-				-0.7
3,544,303	-		BPHYT_RS15625	0.26	+0.9
3,544,303	-		BPHYT_RS15625	0.26	+0.8
3,544,303	-		BPHYT_RS15625	0.26	-0.6
3,544,303	-		BPHYT_RS15625	0.26	-1.9
3,544,398	-		BPHYT_RS15625	0.38	-0.4
3,544,614	+		BPHYT_RS15625	0.66	-0.1
3,544,615	-		BPHYT_RS15625	0.66	-1.1
3,544,615	-		BPHYT_RS15625	0.66	+1.3
3,544,615	-		BPHYT_RS15625	0.66	-0.3
3,544,615	-		BPHYT_RS15625	0.66	-0.5
3,544,661	+		BPHYT_RS15625	0.72	-0.3