Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS15490

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
3,513,277	-		BPHYT_RS15480	0.70	+0.2
3,513,397	+		BPHYT_RS15480	0.90	-0.2
3,513,492	+				+0.1
3,513,493	-				-1.0
3,513,567	+				-0.2
3,513,567	+				-0.2
3,513,567	+				+0.9
3,513,812	-		BPHYT_RS15485	0.79	-0.6
3,513,938	+				+0.9
3,513,980	+				-0.1
3,514,173	-				+2.5
3,514,195	+				+1.7
3,514,195	+				-0.3
3,514,195	+				+1.6
3,514,195	+				-1.3
3,514,196	-				+0.3
3,514,196	-				-0.5
3,514,196	-				+0.3
3,514,251	+				+2.1
3,514,299	-		BPHYT_RS15490	0.12	+1.0
3,514,565	+		BPHYT_RS15490	0.32	+2.0
3,514,775	+		BPHYT_RS15490	0.47	+1.3
3,514,775	+		BPHYT_RS15490	0.47	+2.3
3,514,865	+		BPHYT_RS15490	0.53	+1.8
3,514,986	-		BPHYT_RS15490	0.62	+6.0
3,514,986	-		BPHYT_RS15490	0.62	-1.0
3,514,991	+		BPHYT_RS15490	0.62	+0.3
3,514,991	+		BPHYT_RS15490	0.62	+0.5
3,515,315	+		BPHYT_RS15490	0.86	-1.0
3,515,316	-		BPHYT_RS15490	0.86	+1.1
3,515,855	+				+0.0
3,515,912	+				+0.6
3,515,912	+				-0.2
3,515,913	-				+0.3
3,515,913	-				-0.5
3,516,188	+		BPHYT_RS15500	0.24	-1.6
3,516,189	-		BPHYT_RS15500	0.24	-0.4
3,516,240	+		BPHYT_RS15500	0.28	-0.1
3,516,241	-		BPHYT_RS15500	0.28	+1.5
3,516,242	+		BPHYT_RS15500	0.28	+0.5
3,516,242	+		BPHYT_RS15500	0.28	-0.5
3,516,242	+		BPHYT_RS15500	0.28	-1.3
3,516,242	+		BPHYT_RS15500	0.28	+1.2
3,516,243	-		BPHYT_RS15500	0.28	+0.1
3,516,243	-		BPHYT_RS15500	0.28	-0.6
3,516,243	-		BPHYT_RS15500	0.28	-0.4
3,516,308	+		BPHYT_RS15500	0.33	+0.1
3,516,329	+		BPHYT_RS15500	0.34	-0.3
3,516,379	-		BPHYT_RS15500	0.38	+0.8
3,516,498	-		BPHYT_RS15500	0.46	-1.0