Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS15235

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
3,464,584	+				+2.2
3,464,585	-				+0.9
3,464,711	+		BPHYT_RS15235	0.50	+0.5
3,464,712	-		BPHYT_RS15235	0.51	-1.3
3,464,712	-		BPHYT_RS15235	0.51	-0.9
3,464,713	+		BPHYT_RS15235	0.51	-0.1
3,464,912	+				+0.7
3,464,939	-				+0.6
3,465,058	+				+0.9
3,465,268	+				-1.4
3,465,268	+				+1.2
3,465,456	-		BPHYT_RS15240	0.14	-0.6
3,465,467	-		BPHYT_RS15240	0.15	-0.4
3,465,578	-		BPHYT_RS15240	0.19	-0.6
3,465,589	+		BPHYT_RS15240	0.19	+0.3
3,465,700	+		BPHYT_RS15240	0.23	+0.6
3,465,700	+		BPHYT_RS15240	0.23	+0.5
3,465,788	-		BPHYT_RS15240	0.27	-0.1