Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS15125

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
3,440,844	+				+3.3
3,440,845	-				-0.5
3,440,845	-				+1.4
3,441,198	+		BPHYT_RS15115	0.80	+0.1
3,441,199	-		BPHYT_RS15115	0.80	+0.4
3,441,448	+		BPHYT_RS15120	0.24	-0.5
3,441,642	+		BPHYT_RS15120	0.70	+1.8
3,441,752	+				+0.7
3,441,794	-				-0.0
3,441,864	+				+1.1
3,441,999	+		BPHYT_RS15125	0.15	+0.1
3,442,165	-		BPHYT_RS15125	0.29	+0.2
3,442,165	-		BPHYT_RS15125	0.29	+0.4
3,442,288	+		BPHYT_RS15125	0.39	+1.1
3,442,288	+		BPHYT_RS15125	0.39	+0.7
3,442,288	+		BPHYT_RS15125	0.39	+0.0
3,442,381	-		BPHYT_RS15125	0.46	+0.5
3,442,576	-		BPHYT_RS15125	0.62	-0.0
3,442,650	+		BPHYT_RS15125	0.68	+1.0
3,442,705	-		BPHYT_RS15125	0.72	+0.2
3,442,760	+		BPHYT_RS15125	0.77	-1.2
3,442,988	-				+0.6
3,443,076	+				-1.6
3,443,076	+				-1.1
3,443,077	-				+0.1
3,443,077	-				-1.6
3,443,077	-				-1.0
3,443,114	+				+0.0
3,443,114	+				-1.3
3,443,151	-				+0.2
3,443,178	+		BPHYT_RS15130	0.11	+0.9
3,443,179	-		BPHYT_RS15130	0.11	-1.7
3,443,204	+		BPHYT_RS15130	0.13	+0.9
3,443,279	+		BPHYT_RS15130	0.19	+0.2
3,443,279	+		BPHYT_RS15130	0.19	+2.1
3,443,546	+		BPHYT_RS15130	0.41	-1.5
3,443,547	-		BPHYT_RS15130	0.41	-0.5
3,443,547	-		BPHYT_RS15130	0.41	-0.8
3,443,657	+				+2.2
3,443,751	-		BPHYT_RS15130	0.57	+0.3
3,443,870	+		BPHYT_RS15130	0.67	-0.6
3,443,871	-		BPHYT_RS15130	0.67	-2.5
3,443,871	-		BPHYT_RS15130	0.67	-0.4
3,443,961	-		BPHYT_RS15130	0.74	+1.1
3,444,047	+		BPHYT_RS15130	0.81	+0.3
3,444,047	+		BPHYT_RS15130	0.81	-0.9
3,444,048	-		BPHYT_RS15130	0.82	+0.3