Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS15045

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
3,420,925	+		BPHYT_RS15040	0.42	+1.0
3,420,926	-		BPHYT_RS15040	0.42	+1.6
3,421,000	+		BPHYT_RS15040	0.53	-0.2
3,421,004	-		BPHYT_RS15040	0.53	+0.3
3,421,212	-		BPHYT_RS15040	0.82	+0.4
3,421,606	-				+0.4
3,422,231	+		BPHYT_RS15045	0.24	+0.9
3,422,231	+		BPHYT_RS15045	0.24	+1.2
3,422,232	-		BPHYT_RS15045	0.24	+0.1
3,422,232	-		BPHYT_RS15045	0.24	+1.1
3,422,232	-		BPHYT_RS15045	0.24	+0.2
3,422,333	+		BPHYT_RS15045	0.31	+2.0
3,422,334	-		BPHYT_RS15045	0.31	-1.6
3,422,388	-		BPHYT_RS15045	0.35	+2.4
3,422,388	-		BPHYT_RS15045	0.35	+0.4
3,422,447	+		BPHYT_RS15045	0.39	-0.9
3,423,389	+				+0.3
3,423,390	-				-0.3
3,423,714	+		BPHYT_RS15050	0.12	+0.6
3,423,715	-		BPHYT_RS15050	0.12	-0.9
3,423,806	+		BPHYT_RS15050	0.17	-1.7
3,423,911	+		BPHYT_RS15050	0.23	-0.3
3,423,911	+		BPHYT_RS15050	0.23	-1.1
3,423,923	+		BPHYT_RS15050	0.24	+0.7
3,424,052	+		BPHYT_RS15050	0.31	-0.9
3,424,053	-		BPHYT_RS15050	0.31	-1.7
3,424,134	-		BPHYT_RS15050	0.36	-0.4