Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS15035

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
3,418,465	+				-1.3
3,418,465	+				-0.2
3,418,465	+				-0.6
3,418,465	+				-0.3
3,418,500	+				-1.4
3,418,501	-				+1.9
3,418,501	-				-1.6
3,418,511	+				+1.0
3,418,511	+				+0.1
3,418,515	+				+0.0
3,418,516	-				-0.0
3,418,565	+				-0.2
3,418,668	+		BPHYT_RS15030	0.18	+0.1
3,418,728	+		BPHYT_RS15030	0.29	+0.4
3,418,729	-		BPHYT_RS15030	0.29	-0.5
3,418,774	+		BPHYT_RS15030	0.38	+0.0
3,418,774	+		BPHYT_RS15030	0.38	-1.2
3,418,882	-		BPHYT_RS15030	0.58	-0.6
3,418,960	-		BPHYT_RS15030	0.73	-0.8
3,418,965	+		BPHYT_RS15030	0.74	-0.4
3,418,966	-		BPHYT_RS15030	0.74	+0.0
3,418,966	-		BPHYT_RS15030	0.74	+0.2
3,418,966	-		BPHYT_RS15030	0.74	-1.6
3,419,001	+		BPHYT_RS15030	0.81	-0.6
3,419,064	-				+0.0
3,419,064	-				-1.2
3,419,064	-				+1.2
3,419,082	+				-2.1
3,419,083	-				+0.5
3,419,204	-				-0.3
3,419,253	+				-0.7
3,419,254	-				+0.9
3,419,254	-				+1.4
3,419,383	-				-0.6
3,419,475	-				+0.2
3,419,549	-		BPHYT_RS15035	0.13	-1.1
3,419,549	-		BPHYT_RS15035	0.13	-0.7
3,419,862	+		BPHYT_RS15035	0.41	+0.7
3,420,520	+				-1.1
3,420,521	-				+1.2
3,420,521	-				+0.8
3,420,539	+				+0.1
3,420,539	+				+0.3
3,420,540	-				+0.5
3,420,546	-				+0.2
3,420,546	-				-0.3
3,420,617	-				-0.6
3,420,847	+		BPHYT_RS15040	0.32	+0.5
3,420,848	-		BPHYT_RS15040	0.32	+0.3
3,420,848	-		BPHYT_RS15040	0.32	+1.0
3,420,925	+		BPHYT_RS15040	0.42	+1.0
3,420,926	-		BPHYT_RS15040	0.42	+1.6
3,421,000	+		BPHYT_RS15040	0.53	-0.2
3,421,004	-		BPHYT_RS15040	0.53	+0.3
3,421,212	-		BPHYT_RS15040	0.82	+0.4