Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS14990

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
3,405,792	+		BPHYT_RS14980	0.86	-0.7
3,405,805	+		BPHYT_RS14980	0.88	+0.4
3,405,939	+				+0.2
3,405,939	+				-1.7
3,405,982	-				+0.2
3,405,982	-				+0.1
3,405,993	-				-1.4
3,405,993	-				+0.1
3,406,017	+				-1.1
3,406,018	-				+1.6
3,406,018	-				-0.2
3,406,177	+		BPHYT_RS14985	0.22	+0.8
3,406,177	+		BPHYT_RS14985	0.22	+0.4
3,406,178	-		BPHYT_RS14985	0.22	-0.4
3,406,255	+		BPHYT_RS14985	0.38	-0.6
3,406,255	+		BPHYT_RS14985	0.38	+0.2
3,406,255	+		BPHYT_RS14985	0.38	+0.3
3,406,256	-		BPHYT_RS14985	0.38	-0.5
3,406,256	-		BPHYT_RS14985	0.38	-0.1
3,406,259	-		BPHYT_RS14985	0.38	+0.7
3,406,259	-		BPHYT_RS14985	0.38	-0.0
3,406,356	+		BPHYT_RS14985	0.58	-1.0
3,406,566	+				-0.6
3,406,566	+				-0.5
3,406,566	+				-1.2
3,406,567	-				-0.3
3,406,567	-				-0.1
3,406,567	-				-1.0
3,406,567	-				-1.4
3,406,741	-		BPHYT_RS14990	0.12	+1.4
3,406,886	+		BPHYT_RS14990	0.21	+1.1
3,406,887	-		BPHYT_RS14990	0.21	-0.4
3,406,887	-		BPHYT_RS14990	0.21	+0.3
3,407,076	+		BPHYT_RS14990	0.33	-0.8
3,407,148	+		BPHYT_RS14990	0.38	-0.2
3,407,148	+		BPHYT_RS14990	0.38	-1.5
3,407,148	+		BPHYT_RS14990	0.38	-1.0
3,407,148	+		BPHYT_RS14990	0.38	+0.9
3,407,149	-		BPHYT_RS14990	0.38	-2.0
3,407,149	-		BPHYT_RS14990	0.38	-0.4
3,407,208	-		BPHYT_RS14990	0.42	-0.5
3,407,208	-		BPHYT_RS14990	0.42	-1.3
3,407,211	+		BPHYT_RS14990	0.42	-0.6
3,407,211	+		BPHYT_RS14990	0.42	+0.2
3,407,211	+		BPHYT_RS14990	0.42	-0.5
3,407,212	-		BPHYT_RS14990	0.42	-0.3
3,407,212	-		BPHYT_RS14990	0.42	+0.2
3,407,352	+		BPHYT_RS14990	0.51	-0.1
3,407,352	+		BPHYT_RS14990	0.51	+1.9
3,407,353	-		BPHYT_RS14990	0.51	-1.3
3,407,357	-		BPHYT_RS14990	0.51	-0.8
3,407,397	-		BPHYT_RS14990	0.54	+0.1
3,407,526	+		BPHYT_RS14990	0.62	-1.2
3,407,715	+		BPHYT_RS14990	0.74	-0.2
3,407,715	+		BPHYT_RS14990	0.74	+0.0
3,407,715	+		BPHYT_RS14990	0.74	-0.1
3,408,088	+				-0.2
3,408,088	+				+1.6
3,408,089	-				-2.8
3,408,089	-				-0.3
3,408,089	-				-0.1
3,408,089	-				+1.1
3,408,187	+				-3.0
3,408,360	+				-3.3
3,408,361	-				-1.0
3,408,361	-				-1.3
3,408,539	+		BPHYT_RS14995	0.14	-0.5
3,408,539	+		BPHYT_RS14995	0.14	-1.1
3,408,539	+		BPHYT_RS14995	0.14	+0.8
3,408,539	+				+2.4
3,408,539	+		BPHYT_RS14995	0.14	+1.3
3,408,539	+		BPHYT_RS14995	0.14	-0.4
3,408,539	+		BPHYT_RS14995	0.14	-1.0
3,408,539	+		BPHYT_RS14995	0.14	-0.1
3,408,539	+		BPHYT_RS14995	0.14	-0.5
3,408,540	-		BPHYT_RS14995	0.14	-0.2
3,408,540	-		BPHYT_RS14995	0.14	+1.0
3,408,540	-		BPHYT_RS14995	0.14	+0.4
3,408,540	-		BPHYT_RS14995	0.14	-0.3
3,408,541	+		BPHYT_RS14995	0.14	-0.7
3,408,541	+		BPHYT_RS14995	0.14	-0.1
3,408,541	+				+0.4