Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS14935

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
3,396,825	-				-0.2
3,396,825	-				-1.7
3,396,884	-				-1.0
3,396,918	+				-0.0
3,396,918	+				-0.4
3,396,918	+				-0.7
3,396,918	+				-0.9
3,396,924	+				+0.2
3,397,163	+				-1.2
3,397,195	+				+0.4
3,397,922	+				+2.7
3,397,973	+				+0.9
3,398,057	-				+0.2
3,398,057	-				+1.2
3,398,058	+				+1.5
3,398,058	+				-0.4
3,398,058	+				-2.7
3,398,059	-				+0.2
3,398,060	+				-1.2
3,398,837	+				-0.3