Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS14920

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
3,392,281	-		BPHYT_RS14915	0.22	-3.0
3,392,308	-		BPHYT_RS14915	0.24	-2.4
3,392,308	-		BPHYT_RS14915	0.24	-3.7
3,392,398	-		BPHYT_RS14915	0.32	-6.0
3,392,398	-		BPHYT_RS14915	0.32	-1.9
3,392,407	-		BPHYT_RS14915	0.33	-5.3
3,392,407	-		BPHYT_RS14915	0.33	-3.7
3,392,565	-		BPHYT_RS14915	0.48	-5.4
3,392,572	-		BPHYT_RS14915	0.48	-2.7
3,393,366	+		BPHYT_RS14920	0.80	-1.2
3,393,366	+		BPHYT_RS14920	0.80	-1.4
3,393,367	-		BPHYT_RS14920	0.80	-0.4
3,393,423	+				-0.5
3,393,430	-				+1.1
3,393,430	-				-1.0
3,394,078	-				+2.4
3,394,082	-				-0.8
3,394,082	-				+2.9
3,394,082	-				+0.3
3,394,123	-				-1.8
3,394,123	-				-1.6