Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS14640

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
3,334,380	-				-1.6
3,334,389	+				+0.5
3,334,390	-				-0.5
3,334,669	+		BPHYT_RS14635	0.33	-1.2
3,334,807	+		BPHYT_RS14635	0.53	+0.4
3,334,807	+		BPHYT_RS14635	0.53	+0.1
3,334,808	-		BPHYT_RS14635	0.53	-0.7
3,334,816	-		BPHYT_RS14635	0.54	-0.3
3,334,816	-		BPHYT_RS14635	0.54	-1.4
3,334,816	-		BPHYT_RS14635	0.54	+1.4
3,335,223	+				+0.3
3,335,224	-				+0.1
3,335,244	+				-0.7
3,335,279	+				-0.8
3,335,354	+				+1.1
3,335,380	+				-0.9
3,335,380	+				+1.4
3,335,380	+				-0.5
3,335,381	-				+0.1
3,335,381	-				+0.5
3,335,381	-				+1.0
3,335,381	-				-0.6
3,335,381	-				-0.6
3,335,510	+		BPHYT_RS14640	0.11	-0.2
3,335,511	-		BPHYT_RS14640	0.11	-0.4
3,335,511	-		BPHYT_RS14640	0.11	+0.1
3,335,511	-		BPHYT_RS14640	0.11	+0.6
3,335,512	+		BPHYT_RS14640	0.11	+1.3
3,335,512	+		BPHYT_RS14640	0.11	+0.2
3,335,561	+		BPHYT_RS14640	0.14	+0.5
3,335,562	-		BPHYT_RS14640	0.14	+0.1
3,335,771	+		BPHYT_RS14640	0.26	-0.5
3,335,772	-		BPHYT_RS14640	0.26	+0.6
3,336,053	+		BPHYT_RS14640	0.43	-0.4
3,336,078	-		BPHYT_RS14640	0.44	-0.6
3,336,248	+		BPHYT_RS14640	0.54	+0.5
3,336,249	-		BPHYT_RS14640	0.54	-0.9
3,336,497	+		BPHYT_RS14640	0.69	-0.6
3,336,500	+		BPHYT_RS14640	0.69	-0.2
3,336,500	+		BPHYT_RS14640	0.69	-0.3
3,336,501	-		BPHYT_RS14640	0.69	+1.9
3,336,501	-		BPHYT_RS14640	0.69	+0.2
3,336,536	+		BPHYT_RS14640	0.71	+0.1
3,336,536	+		BPHYT_RS14640	0.71	-0.2
3,336,537	-		BPHYT_RS14640	0.71	+0.0
3,336,575	+		BPHYT_RS14640	0.74	-1.8
3,336,576	-		BPHYT_RS14640	0.74	+1.4
3,336,584	+		BPHYT_RS14640	0.74	-0.6
3,336,584	+		BPHYT_RS14640	0.74	-0.2
3,336,585	-		BPHYT_RS14640	0.74	-0.9
3,336,811	+		BPHYT_RS14640	0.88	-1.0
3,336,812	-		BPHYT_RS14640	0.88	+2.4
3,336,834	-		BPHYT_RS14640	0.89	+0.2
3,337,126	+				+0.7
3,337,652	+				-0.5
3,337,653	-				-0.5
3,337,653	-				-1.0
3,337,978	-				+1.1