Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS14625

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
3,330,565	+				-0.4
3,330,566	-				+1.4
3,330,587	+				-0.0
3,330,789	-		BPHYT_RS14620	0.14	-0.0
3,331,062	+				+0.1
3,331,092	+		BPHYT_RS14620	0.74	-0.7
3,331,093	-		BPHYT_RS14620	0.74	+0.1
3,331,265	+				-0.8
3,331,268	-				-0.2
3,332,072	-		BPHYT_RS14625	0.53	+0.9
3,332,072	-		BPHYT_RS14625	0.53	-0.2
3,332,266	-		BPHYT_RS14625	0.68	+2.3
3,332,299	+		BPHYT_RS14625	0.71	+1.3
3,332,337	-		BPHYT_RS14625	0.74	-1.1
3,332,354	+		BPHYT_RS14625	0.75	-0.2
3,332,355	-		BPHYT_RS14625	0.75	-0.1
3,332,355	-		BPHYT_RS14625	0.75	-0.1
3,332,365	+		BPHYT_RS14625	0.76	-0.1
3,332,974	-		BPHYT_RS14630	0.23	+0.0
3,333,338	+		BPHYT_RS14630	0.52	+1.0
3,333,339	-		BPHYT_RS14630	0.52	-1.7
3,333,381	+		BPHYT_RS14630	0.55	-1.0
3,333,381	+		BPHYT_RS14630	0.55	-0.4
3,333,382	-		BPHYT_RS14630	0.56	-2.3
3,333,538	-		BPHYT_RS14630	0.68	-0.9