Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS14500

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
3,305,609	-		BPHYT_RS14490	0.76	-1.7
3,305,679	+		BPHYT_RS14490	0.82	-2.4
3,305,679	+		BPHYT_RS14490	0.82	-5.3
3,305,679	+		BPHYT_RS14490	0.82	-4.4
3,305,679	+		BPHYT_RS14490	0.82	-1.4
3,305,680	-		BPHYT_RS14490	0.82	-0.7
3,305,680	-		BPHYT_RS14490	0.82	-4.9
3,305,680	-		BPHYT_RS14490	0.82	-3.1
3,305,913	+				-0.7
3,306,073	+		BPHYT_RS14495	0.30	-3.0
3,306,073	+		BPHYT_RS14495	0.30	-0.9
3,306,074	-		BPHYT_RS14495	0.30	-2.4
3,306,074	-		BPHYT_RS14495	0.30	-1.4
3,306,103	-		BPHYT_RS14495	0.35	-0.8
3,306,122	+		BPHYT_RS14495	0.38	-2.4
3,306,184	+		BPHYT_RS14495	0.48	-2.7
3,306,184	+		BPHYT_RS14495	0.48	-0.8
3,306,457	+				-1.7
3,306,457	+				-3.1
3,306,474	-				-2.7
3,306,625	-				-2.5
3,306,625	-				-0.3
3,306,640	+				-0.9
3,306,641	-				-1.4
3,307,239	+		BPHYT_RS14500	0.50	-1.3
3,307,239	+		BPHYT_RS14500	0.50	-0.9
3,307,588	-		BPHYT_RS14500	0.77	-2.6
3,307,951	+				-0.3
3,307,971	+				-0.2
3,307,971	+				-0.9
3,307,971	+				+1.6
3,307,971	+				-1.2
3,307,972	-				+1.1
3,307,972	-				-1.2
3,308,035	-		BPHYT_RS14505	0.22	+1.2
3,308,181	+		BPHYT_RS14505	0.75	+1.4
3,308,181	+		BPHYT_RS14505	0.75	-2.3
3,308,181	+		BPHYT_RS14505	0.75	-0.6
3,308,309	+		BPHYT_RS14510	0.12	+0.9
3,308,462	+		BPHYT_RS14510	0.44	-0.3
3,308,492	+		BPHYT_RS14510	0.50	+0.8
3,308,493	-		BPHYT_RS14510	0.50	-0.9
3,308,507	+		BPHYT_RS14510	0.53	-0.1
3,308,507	+		BPHYT_RS14510	0.53	+0.2
3,308,508	-		BPHYT_RS14510	0.53	-3.0
3,308,508	-		BPHYT_RS14510	0.53	+0.2
3,308,799	+				-2.1