Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS14480

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
3,298,602	-		BPHYT_RS14470	0.35	-0.7
3,298,618	-		BPHYT_RS14470	0.39	-0.5
3,298,618	-		BPHYT_RS14470	0.39	-0.0
3,298,631	+		BPHYT_RS14470	0.42	-0.6
3,298,631	+		BPHYT_RS14470	0.42	+1.3
3,298,632	-		BPHYT_RS14470	0.43	+0.1
3,298,684	+		BPHYT_RS14470	0.56	+0.7
3,298,712	+		BPHYT_RS14470	0.62	+0.8
3,298,727	+		BPHYT_RS14470	0.66	+0.2
3,298,917	-				+1.6
3,298,957	+		BPHYT_RS14475	0.15	-1.2
3,298,957	+		BPHYT_RS14475	0.15	-2.1
3,298,958	-		BPHYT_RS14475	0.15	+0.8
3,298,958	-		BPHYT_RS14475	0.15	+0.1
3,298,958	-		BPHYT_RS14475	0.15	+0.8
3,299,207	-		BPHYT_RS14475	0.53	+0.8
3,299,380	+		BPHYT_RS14475	0.79	-2.1
3,299,380	+		BPHYT_RS14475	0.79	+0.0
3,299,381	-		BPHYT_RS14475	0.79	-0.1
3,299,513	+				+0.5
3,299,514	-				-0.4
3,299,514	-				+1.4
3,299,551	+				+0.1
3,299,552	-				+1.1
3,299,552	-				+0.3
3,299,709	+		BPHYT_RS14480	0.19	-0.2
3,299,710	-		BPHYT_RS14480	0.19	-1.3
3,299,710	-		BPHYT_RS14480	0.19	-0.5
3,299,825	+		BPHYT_RS14480	0.31	-0.1
3,299,826	-		BPHYT_RS14480	0.31	-0.5
3,299,826	-		BPHYT_RS14480	0.31	-0.6
3,299,826	-		BPHYT_RS14480	0.31	-1.5
3,299,826	-		BPHYT_RS14480	0.31	+0.1
3,299,919	-		BPHYT_RS14480	0.40	+0.2
3,299,919	-		BPHYT_RS14480	0.40	-1.9
3,299,990	+		BPHYT_RS14480	0.47	-1.3
3,299,990	+		BPHYT_RS14480	0.47	-1.8
3,299,990	+		BPHYT_RS14480	0.47	+0.0
3,299,991	-		BPHYT_RS14480	0.47	-0.5
3,299,991	-		BPHYT_RS14480	0.47	-1.2
3,299,991	-		BPHYT_RS14480	0.47	-0.4
3,299,991	-		BPHYT_RS14480	0.47	-1.7
3,300,201	+		BPHYT_RS14480	0.67	+0.4
3,300,235	-		BPHYT_RS14480	0.70	-0.0
3,300,339	-		BPHYT_RS14480	0.81	+0.4
3,300,400	-		BPHYT_RS14480	0.87	-0.6
3,300,400	-		BPHYT_RS14480	0.87	-0.5
3,300,400	-		BPHYT_RS14480	0.87	-1.6
3,300,518	-				-2.0
3,300,544	+				-0.3
3,301,179	+				-2.1
3,301,179	+				-1.6
3,301,179	+				-3.4