Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS14410

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
3,287,314	-		BPHYT_RS14400	0.76	-3.5
3,287,314	-		BPHYT_RS14400	0.76	-3.1
3,287,357	-		BPHYT_RS14400	0.83	-1.5
3,287,479	+				-2.4
3,287,479	+				-4.1
3,287,480	-				-1.1
3,287,480	-				-1.2
3,287,485	+				-2.1
3,287,485	+				-3.6
3,287,486	-				+1.1
3,287,514	-				-0.6
3,288,193	-				-1.9
3,288,193	-				+0.4
3,288,218	-				-0.9
3,288,218	-				-0.8
3,288,324	+		BPHYT_RS14410	0.20	-1.2
3,288,494	-		BPHYT_RS14410	0.64	+0.6
3,288,546	-		BPHYT_RS14410	0.77	-0.7
3,288,583	+		BPHYT_RS14410	0.87	+4.4