Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS14275

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
3,261,578	+				-1.2
3,261,578	+				+0.8
3,261,579	-				-0.4
3,261,579	-				-0.3
3,261,579	-				-0.0
3,261,579	-				-0.1
3,261,774	-				-3.1
3,261,781	+				-0.5
3,261,782	-				-5.8
3,261,792	+				-1.4
3,261,792	+				+0.7
3,261,793	-				-4.4
3,261,793	-				-1.4
3,261,793	-				-1.1
3,261,793	-				-1.7
3,261,793	-				-3.2
3,261,793	-				-3.8
3,261,793	-				-1.9
3,262,113	-		BPHYT_RS14270	0.34	-4.3
3,262,122	-		BPHYT_RS14270	0.35	-2.6
3,262,265	+		BPHYT_RS14270	0.59	+0.2
3,262,265	+		BPHYT_RS14270	0.59	+1.1
3,262,265	+		BPHYT_RS14270	0.59	-0.8
3,262,266	-		BPHYT_RS14270	0.59	-3.4
3,262,266	-		BPHYT_RS14270	0.59	-1.8
3,262,388	+		BPHYT_RS14270	0.79	-2.3
3,262,389	-		BPHYT_RS14270	0.79	-4.4
3,262,402	+		BPHYT_RS14270	0.81	-1.3
3,262,402	+		BPHYT_RS14270	0.81	-1.0
3,262,402	+		BPHYT_RS14270	0.81	-0.5
3,262,415	+		BPHYT_RS14270	0.83	-1.2
3,262,416	-		BPHYT_RS14270	0.83	-6.0
3,262,755	-		BPHYT_RS14275	0.47	-5.4
3,262,997	+				+0.4
3,262,998	-				-1.7
3,263,029	+				-2.4
3,263,171	-		BPHYT_RS14280	0.18	-0.4
3,263,171	-		BPHYT_RS14280	0.18	+0.4
3,263,171	-		BPHYT_RS14280	0.18	-1.2
3,263,171	-		BPHYT_RS14280	0.18	+0.3
3,263,198	-		BPHYT_RS14280	0.21	-0.4
3,263,316	+		BPHYT_RS14280	0.34	-1.3
3,263,317	-		BPHYT_RS14280	0.34	-0.5
3,263,428	+		BPHYT_RS14280	0.47	+0.2
3,263,672	-		BPHYT_RS14280	0.75	-0.8
3,263,829	+				+0.9
3,263,890	+				+0.7