Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS13975

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
3,190,701	-		BPHYT_RS13970	0.42	-0.1
3,190,722	-		BPHYT_RS13970	0.43	-0.7
3,190,980	-		BPHYT_RS13970	0.64	+1.6
3,191,048	-		BPHYT_RS13970	0.69	-0.4
3,191,480	-				-1.0
3,191,480	-				+0.4
3,191,488	-				-1.8
3,191,491	-				-0.3
3,191,721	-		BPHYT_RS13975	0.18	+5.6
3,191,721	-		BPHYT_RS13975	0.18	+0.3
3,191,753	-		BPHYT_RS13975	0.22	+0.5
3,192,095	+		BPHYT_RS13975	0.59	+0.7
3,192,155	-		BPHYT_RS13975	0.65	+0.1
3,192,155	-		BPHYT_RS13975	0.65	+0.5
3,192,307	-		BPHYT_RS13975	0.82	+0.4
3,192,644	+				-1.8
3,192,644	+				+0.9
3,192,645	-				+1.1