Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS13775

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
3,138,534	-		BPHYT_RS13770	0.64	+0.5
3,138,535	+		BPHYT_RS13770	0.64	-0.3
3,138,536	-		BPHYT_RS13770	0.64	-0.6
3,138,536	-		BPHYT_RS13770	0.64	+0.2
3,138,650	+		BPHYT_RS13770	0.70	-0.6
3,138,693	-		BPHYT_RS13770	0.72	+0.6
3,139,177	+				+0.6
3,139,304	-				-0.6
3,139,304	-				-0.8
3,139,305	-				+0.7
3,139,475	+		BPHYT_RS13775	0.13	+2.1
3,139,475	+		BPHYT_RS13775	0.13	+2.3
3,139,476	-		BPHYT_RS13775	0.13	-0.6
3,139,476	-		BPHYT_RS13775	0.13	-1.3
3,139,557	+		BPHYT_RS13775	0.16	+1.4
3,139,595	-		BPHYT_RS13775	0.18	+0.3
3,139,615	+		BPHYT_RS13775	0.19	-0.2
3,139,617	+		BPHYT_RS13775	0.19	-0.2
3,139,618	-		BPHYT_RS13775	0.19	+0.2
3,139,807	+		BPHYT_RS13775	0.28	-0.2
3,139,808	-		BPHYT_RS13775	0.28	+0.5
3,139,808	-		BPHYT_RS13775	0.28	-0.8
3,140,173	+		BPHYT_RS13775	0.44	-0.3
3,140,174	-		BPHYT_RS13775	0.44	-0.8
3,140,174	-		BPHYT_RS13775	0.44	-0.5
3,140,764	+		BPHYT_RS13775	0.71	-3.5
3,141,519	-		BPHYT_RS13780	0.57	+0.9
3,141,705	+				-2.5
3,141,706	-		BPHYT_RS13785	0.10	+0.8
3,141,706	-				-1.2
3,141,833	-		BPHYT_RS13785	0.24	-0.3
3,141,859	-		BPHYT_RS13785	0.27	-0.8
3,141,998	+		BPHYT_RS13785	0.43	+5.2
3,142,101	+		BPHYT_RS13785	0.55	+0.5
3,142,102	-		BPHYT_RS13785	0.55	+1.3
3,142,192	-		BPHYT_RS13785	0.65	-3.3
3,142,364	+		BPHYT_RS13785	0.85	-0.4