Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS13650

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
3,110,636	+		BPHYT_RS13645	0.64	-3.6
3,110,637	-		BPHYT_RS13645	0.64	-4.0
3,110,637	-		BPHYT_RS13645	0.64	-4.2
3,110,637	-		BPHYT_RS13645	0.64	-3.5
3,110,675	+		BPHYT_RS13645	0.66	-3.8
3,110,675	+		BPHYT_RS13645	0.66	-0.7
3,110,676	-		BPHYT_RS13645	0.66	-2.1
3,110,813	+		BPHYT_RS13645	0.73	-6.0
3,110,813	+		BPHYT_RS13645	0.73	-3.3
3,110,813	+		BPHYT_RS13645	0.73	-4.0
3,110,813	+		BPHYT_RS13645	0.73	-2.7
3,110,814	-		BPHYT_RS13645	0.73	-3.6
3,110,814	-		BPHYT_RS13645	0.73	-3.2
3,110,862	+		BPHYT_RS13645	0.76	-5.0
3,110,864	+		BPHYT_RS13645	0.76	-4.5
3,110,864	+		BPHYT_RS13645	0.76	-2.1
3,110,865	-		BPHYT_RS13645	0.76	-4.3
3,110,865	-		BPHYT_RS13645	0.76	-2.4
3,110,865	-		BPHYT_RS13645	0.76	-3.0
3,110,889	-		BPHYT_RS13645	0.77	-2.4
3,111,006	-		BPHYT_RS13645	0.83	-3.0
3,111,006	-		BPHYT_RS13645	0.83	-1.7
3,111,017	+		BPHYT_RS13645	0.84	-1.5
3,111,017	+		BPHYT_RS13645	0.84	-4.0
3,111,018	-		BPHYT_RS13645	0.84	-3.0
3,111,020	+		BPHYT_RS13645	0.84	-5.0
3,111,020	+		BPHYT_RS13645	0.84	-2.1
3,111,021	-		BPHYT_RS13645	0.84	-2.6
3,111,021	-		BPHYT_RS13645	0.84	-3.7
3,111,086	+		BPHYT_RS13645	0.87	-2.2
3,111,086	+		BPHYT_RS13645	0.87	-3.5
3,111,189	+				-3.6
3,111,288	-				-3.8
3,111,288	-				-4.1
3,111,316	+				-3.7
3,111,316	+				-3.7
3,111,317	-				-3.8
3,111,362	+				-3.4
3,111,362	+				-3.0
3,111,363	-				-1.3
3,111,363	-				-1.9
3,111,363	-				-0.0
3,111,363	-				+0.1
3,111,363	-				-1.7
3,111,363	-				-0.3
3,111,434	+				-4.3
3,111,476	-				-0.3
3,111,509	-				+0.1
3,111,534	+				-3.6
3,111,671	-				-2.5
3,111,671	-				-4.0
3,111,671	-				-4.0
3,111,671	-				-2.5
3,111,698	+				-1.2
3,111,705	-				+0.0
3,111,754	+				-1.5
3,111,754	+				+0.6
3,111,754	+				-0.2
3,111,755	-				-0.1
3,111,839	-				-1.3
3,111,839	-				+0.4
3,111,964	+				-0.5
3,112,017	+		BPHYT_RS13655	0.10	+0.1
3,112,165	+		BPHYT_RS13655	0.17	-0.5
3,112,276	+		BPHYT_RS13655	0.22	-0.7
3,112,277	-		BPHYT_RS13655	0.22	-0.1
3,112,277	-		BPHYT_RS13655	0.22	-2.7
3,112,499	-		BPHYT_RS13655	0.32	+0.7