Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS13640

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
3,108,735	-				-1.0
3,108,735	-				+1.4
3,108,735	-				+2.8
3,109,557	-				-2.8
3,109,591	-				-4.2
3,109,592	+				+0.1
3,109,593	-				-4.7
3,109,593	-				-3.1
3,109,593	-				-2.8
3,109,597	-				-3.8
3,109,597	-				-4.8
3,109,597	-				-2.2
3,109,597	-				-1.4
3,109,597	-				-1.1
3,109,597	-				-3.2
3,109,597	-				-2.5
3,109,625	-		BPHYT_RS13645	0.11	-3.0
3,109,671	-		BPHYT_RS13645	0.13	-3.1
3,109,872	+		BPHYT_RS13645	0.24	-3.1
3,109,928	+		BPHYT_RS13645	0.27	-4.9
3,109,929	-		BPHYT_RS13645	0.27	-2.8
3,109,929	-		BPHYT_RS13645	0.27	-3.6
3,109,929	-		BPHYT_RS13645	0.27	-4.1
3,109,946	+		BPHYT_RS13645	0.28	-2.1
3,110,108	+		BPHYT_RS13645	0.36	-3.0
3,110,108	+		BPHYT_RS13645	0.36	-4.6
3,110,108	+		BPHYT_RS13645	0.36	-4.3
3,110,109	-		BPHYT_RS13645	0.36	-3.4
3,110,109	-		BPHYT_RS13645	0.36	-4.3
3,110,109	-		BPHYT_RS13645	0.36	-2.9
3,110,128	-		BPHYT_RS13645	0.37	-3.3
3,110,128	-		BPHYT_RS13645	0.37	-2.8
3,110,176	-		BPHYT_RS13645	0.40	-1.0
3,110,176	-		BPHYT_RS13645	0.40	-4.1
3,110,242	-		BPHYT_RS13645	0.43	-4.3
3,110,268	-		BPHYT_RS13645	0.44	-2.3
3,110,268	-		BPHYT_RS13645	0.44	-1.0