Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS13615

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
3,102,780	+				-0.1
3,102,780	+				-1.2
3,102,781	-				-0.9
3,102,837	-				+0.5
3,102,905	+				-1.2
3,102,921	-				+0.3
3,103,155	-				-0.1
3,103,214	-		BPHYT_RS13605	0.66	-2.9
3,103,256	-				+0.9
3,103,256	-				+0.2
3,103,325	-				+2.4
3,103,500	-		BPHYT_RS13610	0.48	+1.3
3,103,548	-		BPHYT_RS13610	0.59	+1.8
3,103,551	-		BPHYT_RS13610	0.60	+3.2
3,103,551	-		BPHYT_RS13610	0.60	+3.0
3,103,665	-		BPHYT_RS13610	0.87	-2.2
3,104,177	+				-2.1