Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS13600

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
3,100,884	+				+1.3
3,101,147	+		BPHYT_RS13595	0.20	-1.0
3,101,176	-		BPHYT_RS13595	0.24	-1.0
3,101,226	+		BPHYT_RS13595	0.30	-3.8
3,101,265	+		BPHYT_RS13595	0.35	-4.1
3,101,376	+		BPHYT_RS13595	0.48	-1.7
3,101,417	+		BPHYT_RS13595	0.53	-3.4
3,101,417	+		BPHYT_RS13595	0.53	-3.8
3,101,469	+		BPHYT_RS13595	0.59	+0.2
3,101,469	+		BPHYT_RS13595	0.59	-3.5
3,101,542	-		BPHYT_RS13595	0.68	-3.4
3,101,601	+		BPHYT_RS13595	0.75	-4.5
3,101,774	+				+0.4
3,101,780	+				-2.9
3,101,781	-				-4.2
3,101,781	-				-3.8
3,101,834	+				-0.8
3,101,856	-				+2.0
3,102,306	-		BPHYT_RS13600	0.80	-0.1
3,102,350	-		BPHYT_RS13600	0.87	+1.2
3,102,390	-				-1.1
3,102,390	-				-0.2
3,102,474	+				+0.1
3,102,517	+				-0.7
3,102,517	+				-0.1
3,102,519	+				+0.2
3,102,529	-				+0.9
3,102,643	+				-0.1
3,102,761	+				+0.6
3,102,780	+				-0.1
3,102,780	+				-1.2
3,102,781	-				-0.9
3,102,837	-				+0.5
3,102,905	+				-1.2
3,102,921	-				+0.3
3,103,155	-				-0.1
3,103,214	-		BPHYT_RS13605	0.66	-2.9
3,103,256	-				+0.9
3,103,256	-				+0.2
3,103,325	-				+2.4