Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS13575

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
3,096,339	+		BPHYT_RS13570	0.47	+0.7
3,096,858	+		BPHYT_RS13570	0.76	+0.1
3,096,858	+		BPHYT_RS13570	0.76	-1.9
3,096,859	-		BPHYT_RS13570	0.76	-0.3
3,096,931	-		BPHYT_RS13570	0.80	-0.1
3,097,294	+				+0.1
3,097,294	+				-0.3
3,097,326	+				-0.5
3,097,327	-				-0.1
3,097,350	+				+3.0
3,097,375	-				+2.0
3,097,456	-		BPHYT_RS13575	0.10	-0.9
3,097,476	-		BPHYT_RS13575	0.12	-0.3
3,097,529	-		BPHYT_RS13575	0.16	+0.1
3,097,529	-		BPHYT_RS13575	0.16	-1.0
3,097,529	-		BPHYT_RS13575	0.16	-0.4
3,097,529	-		BPHYT_RS13575	0.16	-1.4
3,097,543	+		BPHYT_RS13575	0.17	-0.8
3,097,571	-		BPHYT_RS13575	0.19	-0.5
3,097,603	-		BPHYT_RS13575	0.22	+0.4
3,098,364	+		BPHYT_RS13575	0.80	+0.1
3,098,365	-		BPHYT_RS13575	0.80	-0.6
3,098,531	-				+1.2
3,098,992	-		BPHYT_RS13580	0.48	+0.8
3,098,992	-		BPHYT_RS13580	0.48	+0.4
3,098,992	-		BPHYT_RS13580	0.48	+0.2
3,099,241	-		BPHYT_RS13580	0.82	-0.7
3,099,424	+				-0.7
3,099,424	+				-0.4
3,099,425	-				-0.3