Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS13505

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
3,080,759	+		BPHYT_RS13500	0.65	+0.9
3,080,759	+		BPHYT_RS13500	0.65	-0.1
3,080,903	-		BPHYT_RS13500	0.73	+0.3
3,081,051	+		BPHYT_RS13500	0.82	-1.0
3,081,052	-		BPHYT_RS13500	0.82	+0.2
3,081,052	-		BPHYT_RS13500	0.82	-0.3
3,081,054	-		BPHYT_RS13500	0.82	+0.2
3,081,054	-		BPHYT_RS13500	0.82	-0.7
3,081,282	-				-0.6
3,081,327	-				-0.3
3,081,327	-				+1.1
3,081,411	-				+0.8
3,081,569	+		BPHYT_RS13505	0.24	+0.9
3,081,588	+		BPHYT_RS13505	0.26	-0.2
3,081,611	-		BPHYT_RS13505	0.29	-1.0
3,081,815	+		BPHYT_RS13505	0.51	+0.4
3,081,817	+		BPHYT_RS13505	0.51	+0.4
3,081,818	-		BPHYT_RS13505	0.51	+1.3
3,081,818	-		BPHYT_RS13505	0.51	+1.0
3,082,312	-				-0.1
3,082,818	-		BPHYT_RS13510	0.26	-0.1
3,082,821	+		BPHYT_RS13510	0.26	+0.1
3,082,822	-		BPHYT_RS13510	0.26	+0.4
3,082,977	-		BPHYT_RS13510	0.38	-0.9
3,082,977	-		BPHYT_RS13510	0.38	-0.6
3,082,977	-		BPHYT_RS13510	0.38	-0.0
3,083,194	-		BPHYT_RS13510	0.56	-0.5