Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS13460

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
3,072,827	+				-1.1
3,072,828	-				-0.3
3,072,829	+				+0.1
3,073,220	+		BPHYT_RS13460	0.25	-0.9
3,073,399	+		BPHYT_RS13460	0.37	+0.2
3,074,153	-		BPHYT_RS13460	0.84	+0.9
3,074,423	+				+0.4
3,074,563	-		BPHYT_RS13465	0.31	+0.3
3,074,631	+		BPHYT_RS13465	0.49	-0.8
3,074,632	-		BPHYT_RS13465	0.49	-1.3
3,074,765	-		BPHYT_RS13465	0.84	-1.1
3,074,839	+				-0.2
3,075,022	+		BPHYT_RS13470	0.29	-0.3
3,075,257	-				+1.0
3,075,259	-				+2.0
3,075,350	+				+0.7