Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS13390

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
3,058,281	+		BPHYT_RS13385	0.61	+1.4
3,058,407	+		BPHYT_RS13385	0.71	+0.7
3,058,408	-		BPHYT_RS13385	0.71	-0.6
3,058,731	-				-2.4
3,058,823	+				-0.3
3,058,823	+				+0.8
3,058,824	-				-1.1
3,058,824	-				+1.4
3,058,824	-				-0.5
3,058,824	-				+1.8
3,059,209	+		BPHYT_RS13390	0.35	+1.5
3,059,743	+				-0.5
3,059,744	-				+0.3
3,060,158	-		BPHYT_RS13395	0.78	-0.2