Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS13240

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
3,020,405	+		BPHYT_RS13235	0.77	+0.3
3,020,405	+		BPHYT_RS13235	0.77	-0.5
3,020,406	-		BPHYT_RS13235	0.77	-0.8
3,020,408	-		BPHYT_RS13235	0.77	-1.3
3,020,974	-				-0.7
3,021,168	+				-1.2
3,021,169	-				+0.3
3,021,222	+				-0.2
3,021,362	+		BPHYT_RS13240	0.16	+0.7
3,021,428	+		BPHYT_RS13240	0.23	-2.4
3,021,545	+		BPHYT_RS13240	0.36	-0.0
3,021,623	+		BPHYT_RS13240	0.44	-0.4
3,021,623	+		BPHYT_RS13240	0.44	+1.4
3,021,624	-		BPHYT_RS13240	0.44	-0.0
3,021,725	-		BPHYT_RS13240	0.55	+0.7
3,021,742	+		BPHYT_RS13240	0.57	+1.2
3,021,839	-		BPHYT_RS13240	0.67	+0.5
3,021,839	-		BPHYT_RS13240	0.67	+0.7
3,021,917	-		BPHYT_RS13240	0.76	+0.9
3,021,917	-		BPHYT_RS13240	0.76	-0.5
3,021,917	-		BPHYT_RS13240	0.76	+0.3
3,021,918	+		BPHYT_RS13240	0.76	-0.6
3,021,966	+		BPHYT_RS13240	0.81	+1.4
3,022,141	+				-1.3
3,022,141	+				-2.1
3,022,471	+				-0.4
3,022,609	+				-0.6
3,023,049	-				-0.8
3,023,113	+		BPHYT_RS13245	0.10	-2.8
3,023,113	+		BPHYT_RS13245	0.10	+0.8
3,023,114	-		BPHYT_RS13245	0.10	+2.5
3,023,114	-		BPHYT_RS13245	0.10	-1.7