Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS13230

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
3,017,712	+				-1.4
3,017,757	-				+0.4
3,017,824	+				+1.0
3,017,825	-				-0.1
3,017,912	-				+0.8
3,017,952	-				-2.0
3,017,952	-				-0.0
3,017,963	+				+0.6
3,017,963	+				-0.5
3,017,964	-				+0.2
3,017,964	-				+0.1
3,017,964	-				-0.3
3,017,964	-				-0.4
3,017,967	+				-0.9
3,018,294	+				-0.4
3,018,498	+		BPHYT_RS13230	0.30	+0.6
3,018,529	-		BPHYT_RS13230	0.36	-1.1
3,018,592	-		BPHYT_RS13230	0.49	+0.7
3,018,660	+		BPHYT_RS13230	0.63	-0.7
3,018,660	+		BPHYT_RS13230	0.63	+0.5
3,018,661	-		BPHYT_RS13230	0.63	-2.0
3,018,684	+		BPHYT_RS13230	0.68	+2.4
3,018,685	-		BPHYT_RS13230	0.68	-0.7
3,018,685	-		BPHYT_RS13230	0.68	+0.1
3,018,705	+		BPHYT_RS13230	0.72	-0.4
3,018,705	+		BPHYT_RS13230	0.72	+0.2
3,018,706	-		BPHYT_RS13230	0.72	-1.8
3,018,706	-		BPHYT_RS13230	0.72	+0.1
3,018,724	-		BPHYT_RS13230	0.76	-0.3
3,018,735	+		BPHYT_RS13230	0.78	-1.4
3,018,736	-		BPHYT_RS13230	0.78	+0.4
3,018,754	-		BPHYT_RS13230	0.82	-0.7
3,019,042	+				+1.6
3,019,042	+				-0.4
3,019,043	-				+0.2
3,019,057	-				-0.7
3,019,057	-				-2.8
3,019,194	+				+1.0
3,019,194	+				+2.0
3,019,194	+				-0.4
3,019,195	-				-0.5
3,019,195	-				+0.4
3,019,448	+		BPHYT_RS13235	0.17	+0.3
3,019,448	+		BPHYT_RS13235	0.17	-0.0
3,019,805	+		BPHYT_RS13235	0.39	-1.4
3,019,806	-		BPHYT_RS13235	0.39	-0.2
3,019,806	-		BPHYT_RS13235	0.39	-0.4
3,019,820	+		BPHYT_RS13235	0.40	+0.7