Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS13115

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
2,996,103	+		BPHYT_RS13110	0.29	+0.5
2,996,104	-		BPHYT_RS13110	0.30	+0.1
2,996,104	-		BPHYT_RS13110	0.30	-0.5
2,996,158	-		BPHYT_RS13110	0.35	+1.0
2,996,211	+		BPHYT_RS13110	0.39	+1.3
2,996,317	-		BPHYT_RS13110	0.49	-1.0
2,996,484	+		BPHYT_RS13110	0.64	+2.5
2,996,485	-		BPHYT_RS13110	0.65	-1.8
2,996,784	+				+1.3
2,997,029	+		BPHYT_RS13115	0.20	+0.2
2,997,030	-		BPHYT_RS13115	0.20	+0.8
2,997,560	+		BPHYT_RS13115	0.84	-0.1
2,997,560	+		BPHYT_RS13115	0.84	+1.0
2,997,561	-		BPHYT_RS13115	0.84	+0.3
2,997,910	+		BPHYT_RS13120	0.19	-0.1
2,997,910	+		BPHYT_RS13120	0.19	+0.4
2,997,971	-		BPHYT_RS13120	0.26	-1.1
2,998,160	-		BPHYT_RS13120	0.47	+0.7
2,998,475	-		BPHYT_RS13120	0.82	+0.7
2,998,475	-		BPHYT_RS13120	0.82	-0.2
2,998,542	-		BPHYT_RS13120	0.89	-0.1