Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS13105

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
2,993,833	+				-0.1
2,993,833	+				+1.3
2,993,834	-				+3.4
2,993,897	+				-2.6
2,993,898	-				+0.2
2,993,898	-				+0.1
2,994,024	+				+0.5
2,994,024	+				+0.2
2,994,098	+				+0.5
2,994,287	+				+0.4
2,994,287	+				-0.8
2,994,287	+				-1.5
2,994,288	-				+1.2
2,994,288	-				+0.0
2,994,288	-				+1.0
2,994,485	-				-1.1
2,994,801	-		BPHYT_RS13105	0.23	-0.3
2,994,985	-		BPHYT_RS13105	0.40	-1.1
2,995,072	+		BPHYT_RS13105	0.48	-0.5
2,995,595	+				-1.0
2,995,596	-				-0.1
2,995,658	-				+1.0
2,996,103	+		BPHYT_RS13110	0.29	+0.5
2,996,104	-		BPHYT_RS13110	0.30	+0.1
2,996,104	-		BPHYT_RS13110	0.30	-0.5
2,996,158	-		BPHYT_RS13110	0.35	+1.0
2,996,211	+		BPHYT_RS13110	0.39	+1.3
2,996,317	-		BPHYT_RS13110	0.49	-1.0
2,996,484	+		BPHYT_RS13110	0.64	+2.5
2,996,485	-		BPHYT_RS13110	0.65	-1.8