Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS12975

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
2,961,376	+		BPHYT_RS12970	0.61	-1.3
2,961,377	-		BPHYT_RS12970	0.61	-0.6
2,961,377	-		BPHYT_RS12970	0.61	-2.4
2,961,382	+		BPHYT_RS12970	0.61	-0.6
2,961,382	+		BPHYT_RS12970	0.61	-0.4
2,961,382	+		BPHYT_RS12970	0.61	-1.8
2,961,383	-		BPHYT_RS12970	0.61	-1.2
2,961,383	-		BPHYT_RS12970	0.61	-1.0
2,961,383	-		BPHYT_RS12970	0.61	+0.6
2,961,721	-				-0.1
2,961,721	-				-1.2
2,961,770	+				-1.6
2,961,808	+				+0.8
2,961,809	-				+2.3
2,962,091	-				-0.4
2,962,188	-				+0.1
2,962,188	-				+0.8
2,962,310	+				+1.3
2,962,362	-				+0.4
2,962,525	+				-1.4
2,962,526	-				-0.3
2,962,530	-				-0.7
2,962,662	+		BPHYT_RS12975	0.11	+0.1
2,962,662	+		BPHYT_RS12975	0.11	+0.1
2,962,663	-		BPHYT_RS12975	0.11	+1.1
2,962,830	-		BPHYT_RS12975	0.18	-1.5
2,962,830	-		BPHYT_RS12975	0.18	+0.8
2,963,027	+		BPHYT_RS12975	0.25	-0.7
2,963,130	+		BPHYT_RS12975	0.29	-2.1
2,963,332	-		BPHYT_RS12975	0.37	-1.8
2,963,800	+		BPHYT_RS12975	0.54	+1.7
2,963,801	-		BPHYT_RS12975	0.54	-0.9
2,963,806	-		BPHYT_RS12975	0.55	+0.1
2,963,806	-		BPHYT_RS12975	0.55	-0.6
2,964,150	+		BPHYT_RS12975	0.68	-0.1
2,964,150	+		BPHYT_RS12975	0.68	+0.4
2,964,150	+		BPHYT_RS12975	0.68	-0.9
2,964,738	+				+0.1
2,964,739	-				+1.2
2,964,739	-				-0.3
2,964,739	-				-0.2
2,964,740	+				+0.4
2,964,863	+				-0.0
2,964,867	+				-0.2
2,964,867	+				-2.9
2,964,867	+				-0.4
2,964,868	-				-2.0
2,964,868	-				-0.6
2,964,931	-				+0.1
2,964,999	+				-0.2
2,965,130	+				+0.4
2,965,182	-				+1.1
2,965,264	+				+2.2
2,965,265	-				+0.3
2,965,265	-				+0.7
2,965,265	-				-1.1
2,965,266	+				+0.1
2,965,266	+				-0.7
2,965,266	+				+0.6
2,965,405	-				+0.6
2,965,500	+				-0.3
2,965,501	-				-0.4
2,965,534	+				-0.3
2,965,875	+		BPHYT_RS12980	0.15	+0.1
2,965,875	+		BPHYT_RS12980	0.15	-1.0
2,965,876	-		BPHYT_RS12980	0.15	-0.3