Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS12935

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
2,951,431	-		BPHYT_RS12930	0.63	-1.9
2,951,433	+		BPHYT_RS12930	0.63	+1.4
2,951,433	+		BPHYT_RS12930	0.63	+1.2
2,951,434	-		BPHYT_RS12930	0.63	-0.5
2,951,474	-		BPHYT_RS12930	0.65	-2.8
2,951,496	+		BPHYT_RS12930	0.66	-0.3
2,951,496	+		BPHYT_RS12930	0.66	-0.4
2,951,917	+		BPHYT_RS12930	0.86	+0.3
2,951,918	-		BPHYT_RS12930	0.86	+0.0
2,951,965	-		BPHYT_RS12930	0.89	-1.2
2,952,539	-		BPHYT_RS12935	0.15	-3.0
2,952,951	+		BPHYT_RS12935	0.42	-2.6
2,952,952	-		BPHYT_RS12935	0.42	-2.8
2,952,952	-		BPHYT_RS12935	0.42	+1.2
2,953,059	+		BPHYT_RS12935	0.49	-0.3
2,953,291	+		BPHYT_RS12935	0.64	-1.4
2,953,396	+		BPHYT_RS12935	0.71	-3.7
2,953,540	-		BPHYT_RS12935	0.81	-2.7
2,953,834	+				-0.2
2,953,859	-				-2.0
2,953,859	-				-2.9
2,953,872	+				-1.5
2,953,872	+				-2.6
2,953,872	+				-0.3
2,953,873	-				+0.1
2,953,873	-				-1.5
2,953,873	-				+0.1
2,953,873	-				+2.1
2,953,873	-				-0.7
2,953,873	-				+0.1
2,953,880	+				-2.0
2,953,881	-				-1.1
2,953,881	-				-1.7
2,954,172	+		BPHYT_RS12940	0.26	-2.3
2,954,173	-		BPHYT_RS12940	0.26	-1.7
2,954,270	+		BPHYT_RS12940	0.34	-1.9
2,954,608	+		BPHYT_RS12940	0.64	+0.5
2,954,610	+		BPHYT_RS12940	0.64	-2.0
2,954,611	-		BPHYT_RS12940	0.64	-1.1
2,954,645	+		BPHYT_RS12940	0.67	-0.7
2,954,645	+		BPHYT_RS12940	0.67	-2.0
2,954,646	-		BPHYT_RS12940	0.67	+1.4