Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS12930

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
2,949,182	-				-0.4
2,949,489	-		BPHYT_RS12925	0.24	-1.5
2,950,123	+				+0.9
2,950,347	+		BPHYT_RS12930	0.12	-2.8
2,950,348	-		BPHYT_RS12930	0.12	-1.7
2,950,409	+		BPHYT_RS12930	0.15	+0.3
2,950,472	+		BPHYT_RS12930	0.18	-0.0
2,950,472	+		BPHYT_RS12930	0.18	+0.9
2,950,473	-		BPHYT_RS12930	0.18	-1.5
2,950,473	-		BPHYT_RS12930	0.18	-1.7
2,950,702	-		BPHYT_RS12930	0.29	-1.2
2,950,746	+		BPHYT_RS12930	0.31	-0.1
2,950,747	-		BPHYT_RS12930	0.31	-0.4
2,951,130	-		BPHYT_RS12930	0.49	+0.4
2,951,130	-		BPHYT_RS12930	0.49	-1.5
2,951,431	-		BPHYT_RS12930	0.63	-1.9
2,951,433	+		BPHYT_RS12930	0.63	+1.4
2,951,433	+		BPHYT_RS12930	0.63	+1.2
2,951,434	-		BPHYT_RS12930	0.63	-0.5
2,951,474	-		BPHYT_RS12930	0.65	-2.8
2,951,496	+		BPHYT_RS12930	0.66	-0.3
2,951,496	+		BPHYT_RS12930	0.66	-0.4
2,951,917	+		BPHYT_RS12930	0.86	+0.3
2,951,918	-		BPHYT_RS12930	0.86	+0.0
2,951,965	-		BPHYT_RS12930	0.89	-1.2
2,952,539	-		BPHYT_RS12935	0.15	-3.0
2,952,951	+		BPHYT_RS12935	0.42	-2.6
2,952,952	-		BPHYT_RS12935	0.42	-2.8
2,952,952	-		BPHYT_RS12935	0.42	+1.2
2,953,059	+		BPHYT_RS12935	0.49	-0.3