Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS12920

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
2,948,105	+				-0.2
2,948,264	+				+0.3
2,948,390	+				+0.5
2,948,462	+				+0.4
2,948,651	-				+0.7
2,948,666	-				+1.0
2,948,776	-				+0.1
2,948,777	+				-0.6
2,948,902	+		BPHYT_RS12920	0.19	-0.8
2,949,182	-				-0.4
2,949,489	-		BPHYT_RS12925	0.24	-1.5
2,950,123	+				+0.9