Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS12840

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
2,925,705	-		BPHYT_RS12835	0.49	+1.4
2,926,637	-				+0.1
2,926,637	-				-2.2
2,927,252	-		BPHYT_RS12840	0.23	+0.4
2,927,586	-		BPHYT_RS12840	0.35	+2.4
2,927,586	-		BPHYT_RS12840	0.35	-0.2
2,927,586	-		BPHYT_RS12840	0.35	-1.7
2,927,674	+		BPHYT_RS12840	0.39	-1.3
2,928,202	+		BPHYT_RS12840	0.58	+0.4
2,928,203	-		BPHYT_RS12840	0.58	-0.6
2,928,680	-				+0.4
2,928,680	-		BPHYT_RS12840	0.76	-0.4
2,928,866	-		BPHYT_RS12840	0.83	-0.7
2,929,130	-				-0.6
2,929,300	+				-2.8
2,929,348	+				+0.1
2,929,349	-				+0.3
2,929,412	+				-2.3
2,929,544	-				-0.3
2,929,578	+				+2.2
2,929,721	-				-2.4
2,929,822	+				-4.2
2,929,822	+				-2.1
2,929,979	+		BPHYT_RS12845	0.15	-3.8
2,929,980	-		BPHYT_RS12845	0.15	+0.1
2,929,980	-		BPHYT_RS12845	0.15	-4.8
2,929,980	-				+0.1
2,929,980	-		BPHYT_RS12845	0.15	-4.6
2,929,980	-		BPHYT_RS12845	0.15	-3.8
2,929,980	-		BPHYT_RS12845	0.15	+0.4
2,929,992	-		BPHYT_RS12845	0.15	-3.0
2,929,992	-		BPHYT_RS12845	0.15	-2.9
2,930,117	-		BPHYT_RS12845	0.20	-1.6
2,930,147	+		BPHYT_RS12845	0.21	-2.3
2,930,147	+		BPHYT_RS12845	0.21	-4.5
2,930,148	-		BPHYT_RS12845	0.21	-3.2
2,930,148	-		BPHYT_RS12845	0.21	-3.6
2,930,169	-		BPHYT_RS12845	0.22	-3.4