Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS12745

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
2,907,397	+				+0.4
2,907,397	+				+0.4
2,907,398	-				-0.2
2,907,398	-				-1.0
2,907,400	-				+1.2
2,907,400	-				-0.1
2,907,480	+				-0.4
2,907,860	+		BPHYT_RS12745	0.46	+0.6
2,907,860	+		BPHYT_RS12745	0.46	+1.2
2,907,893	-		BPHYT_RS12745	0.50	+0.4
2,907,893	-		BPHYT_RS12745	0.50	-1.1
2,907,896	+		BPHYT_RS12745	0.51	-0.2
2,907,897	-		BPHYT_RS12745	0.51	-1.0
2,907,897	-		BPHYT_RS12745	0.51	+2.3
2,907,897	-		BPHYT_RS12745	0.51	-0.7
2,907,926	+		BPHYT_RS12745	0.55	+1.6
2,907,927	-		BPHYT_RS12745	0.55	+0.8
2,908,190	+				+2.4
2,908,190	+				-2.3
2,908,190	+				-0.3
2,908,191	-				-0.3
2,908,191	-				-1.8
2,908,191	-				+0.4
2,908,995	-				-0.8
2,909,017	-				-1.1