Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS12730

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
2,901,463	+		BPHYT_RS12725	0.22	-3.5
2,901,554	+		BPHYT_RS12725	0.30	-3.7
2,901,676	+		BPHYT_RS12725	0.40	-3.8
2,901,676	+		BPHYT_RS12725	0.40	-4.2
2,901,677	-		BPHYT_RS12725	0.40	-3.6
2,901,677	-		BPHYT_RS12725	0.40	-3.5
2,901,677	-		BPHYT_RS12725	0.40	-3.9
2,901,920	+		BPHYT_RS12725	0.61	-1.6
2,901,920	+		BPHYT_RS12725	0.61	-3.6
2,902,065	+		BPHYT_RS12725	0.73	-2.4
2,902,065	+		BPHYT_RS12725	0.73	-3.9
2,902,065	+		BPHYT_RS12725	0.73	-1.9
2,902,065	+		BPHYT_RS12725	0.73	-0.6
2,902,066	-		BPHYT_RS12725	0.74	-3.8
2,902,066	-		BPHYT_RS12725	0.74	-4.9
2,902,066	-		BPHYT_RS12725	0.74	-3.4
2,902,067	+		BPHYT_RS12725	0.74	-4.5
2,902,067	+		BPHYT_RS12725	0.74	-3.7
2,902,067	+		BPHYT_RS12725	0.74	-3.7
2,902,068	-		BPHYT_RS12725	0.74	-4.8
2,902,068	-		BPHYT_RS12725	0.74	-1.9
2,902,068	-		BPHYT_RS12725	0.74	-4.9
2,902,068	-		BPHYT_RS12725	0.74	-4.1
2,902,068	-		BPHYT_RS12725	0.74	-4.0
2,902,098	+		BPHYT_RS12725	0.76	-3.3
2,902,159	+		BPHYT_RS12725	0.81	-4.7
2,902,160	-		BPHYT_RS12725	0.82	-2.0
2,902,160	-		BPHYT_RS12725	0.82	-4.1
2,902,160	-		BPHYT_RS12725	0.82	-3.7
2,902,515	-				-0.5
2,902,714	+		BPHYT_RS12730	0.17	-0.6
2,902,714	+		BPHYT_RS12730	0.17	-0.5
2,902,714	+		BPHYT_RS12730	0.17	-1.4
2,902,715	-		BPHYT_RS12730	0.17	-0.4
2,902,715	-		BPHYT_RS12730	0.17	+0.6
2,902,736	+		BPHYT_RS12730	0.18	-0.3
2,902,737	-		BPHYT_RS12730	0.18	+0.4
2,902,760	+		BPHYT_RS12730	0.20	+0.3
2,902,978	+		BPHYT_RS12730	0.32	-1.7
2,902,979	-		BPHYT_RS12730	0.32	+0.4
2,902,979	-		BPHYT_RS12730	0.32	+0.8
2,902,997	-		BPHYT_RS12730	0.33	-2.3
2,902,997	-		BPHYT_RS12730	0.33	-1.1
2,903,021	+		BPHYT_RS12730	0.35	+0.7
2,903,021	+		BPHYT_RS12730	0.35	-0.5
2,903,021	+		BPHYT_RS12730	0.35	-0.3
2,903,021	+		BPHYT_RS12730	0.35	-0.4
2,903,021	+		BPHYT_RS12730	0.35	+2.2
2,903,022	-		BPHYT_RS12730	0.35	-0.8
2,903,022	-		BPHYT_RS12730	0.35	-0.1
2,903,022	-		BPHYT_RS12730	0.35	-1.3
2,903,022	-		BPHYT_RS12730	0.35	-1.2
2,903,022	-		BPHYT_RS12730	0.35	-1.4
2,903,025	+		BPHYT_RS12730	0.35	+0.4
2,903,025	+		BPHYT_RS12730	0.35	-0.4
2,903,025	+		BPHYT_RS12730	0.35	+0.1
2,903,026	-		BPHYT_RS12730	0.35	+0.2
2,903,026	-		BPHYT_RS12730	0.35	+0.2
2,903,353	+		BPHYT_RS12730	0.54	+0.8
2,903,852	+		BPHYT_RS12730	0.83	+2.9
2,903,852	+		BPHYT_RS12730	0.83	-1.2
2,903,852	+		BPHYT_RS12730	0.83	-0.8
2,903,853	-		BPHYT_RS12730	0.84	+0.4
2,903,853	-		BPHYT_RS12730	0.84	+1.0
2,904,079	+				+0.4
2,904,132	-				-0.5
2,904,372	+				+0.1
2,904,382	+				+0.3
2,904,382	+				+0.6