Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS12645

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
2,883,695	+		BPHYT_RS12640	0.17	-0.3
2,883,801	-		BPHYT_RS12640	0.29	+0.9
2,883,892	+		BPHYT_RS12640	0.40	+2.4
2,883,893	-		BPHYT_RS12640	0.41	-0.0
2,883,893	-		BPHYT_RS12640	0.41	+1.8
2,883,897	-		BPHYT_RS12640	0.41	+0.6
2,884,013	-		BPHYT_RS12640	0.55	+1.0
2,884,013	-		BPHYT_RS12640	0.55	+1.2
2,884,016	+		BPHYT_RS12640	0.55	-0.7
2,884,017	-		BPHYT_RS12640	0.55	+0.7
2,884,017	-		BPHYT_RS12640	0.55	+0.8
2,884,017	-		BPHYT_RS12640	0.55	+1.4
2,884,017	-		BPHYT_RS12640	0.55	-1.3
2,884,017	-		BPHYT_RS12640	0.55	+1.4
2,884,017	-		BPHYT_RS12640	0.55	+1.4
2,884,017	-		BPHYT_RS12640	0.55	+4.6
2,884,017	-		BPHYT_RS12640	0.55	+0.0
2,884,017	-		BPHYT_RS12640	0.55	+0.6
2,884,164	+		BPHYT_RS12640	0.73	+1.1
2,884,164	+		BPHYT_RS12640	0.73	-1.2
2,884,215	-		BPHYT_RS12640	0.79	+1.5
2,884,215	-		BPHYT_RS12640	0.79	+0.5
2,884,418	-				-0.4
2,884,430	+				+1.5
2,884,446	+				+0.4
2,884,447	-				-0.7
2,884,447	-				+0.3
2,884,447	-				-0.2
2,884,447	-				-0.2
2,884,507	+				-0.7
2,884,708	-		BPHYT_RS12645	0.23	+1.0
2,884,708	-		BPHYT_RS12645	0.23	-2.1
2,884,745	-		BPHYT_RS12645	0.27	-1.3
2,884,907	-				-1.4
2,884,907	-		BPHYT_RS12645	0.45	+1.0
2,884,961	+		BPHYT_RS12645	0.51	-0.3
2,885,144	-		BPHYT_RS12645	0.72	+0.9
2,885,158	+		BPHYT_RS12645	0.74	+0.8
2,885,158	+		BPHYT_RS12645	0.74	-0.1
2,885,159	-		BPHYT_RS12645	0.74	-0.0
2,885,436	-				+1.6
2,885,604	+		BPHYT_RS12650	0.14	-1.0
2,885,625	+		BPHYT_RS12650	0.16	-0.7
2,885,625	+		BPHYT_RS12650	0.16	-1.4
2,885,910	+		BPHYT_RS12650	0.47	-1.4
2,885,983	-		BPHYT_RS12650	0.55	-0.9
2,886,226	-		BPHYT_RS12650	0.81	-0.6