Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS12615

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
2,879,745	-		BPHYT_RS12615	0.52	-1.3
2,880,249	+				+0.7
2,880,431	-		BPHYT_RS12620	0.33	+1.4
2,880,830	-				-0.6
2,880,830	-				+1.9
2,880,830	-				+0.7
2,880,830	-				-0.8
2,880,901	+				-1.5
2,880,902	-				+0.4
2,880,990	-				-0.1
2,880,990	-				-0.6
2,880,990	-				-0.1
2,881,011	+		BPHYT_RS12625	0.12	-1.7
2,881,011	+		BPHYT_RS12625	0.12	-2.1
2,881,012	-		BPHYT_RS12625	0.12	-0.6
2,881,012	-		BPHYT_RS12625	0.12	-0.1
2,881,012	-		BPHYT_RS12625	0.12	+0.2