Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS12530

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
2,860,692	-				-0.2
2,860,696	-				-1.0
2,860,740	-				+0.2
2,860,796	+				-0.3
2,861,222	+		BPHYT_RS12530	0.31	-0.1
2,861,688	+		BPHYT_RS12530	0.72	-3.2
2,861,709	-		BPHYT_RS12530	0.73	-4.2
2,861,874	+		BPHYT_RS12530	0.88	-5.5
2,861,875	-		BPHYT_RS12530	0.88	-5.4
2,861,875	-		BPHYT_RS12530	0.88	-2.6
2,861,875	-		BPHYT_RS12530	0.88	-2.6
2,861,875	-				-1.1
2,861,876	+		BPHYT_RS12530	0.88	-4.5
2,862,001	+				-3.5
2,862,001	+				-0.7
2,862,001	+				-1.4
2,862,028	-				-1.3
2,862,382	-		BPHYT_RS12535	0.44	+0.3
2,862,496	-				-0.0
2,862,587	-				-0.3
2,862,676	-		BPHYT_RS12540	0.16	-1.3