Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS12480

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
2,845,509	+		BPHYT_RS12475	0.73	-0.2
2,845,510	-		BPHYT_RS12475	0.73	+2.2
2,845,521	+		BPHYT_RS12475	0.73	+5.4
2,845,521	+		BPHYT_RS12475	0.73	+4.4
2,845,522	-		BPHYT_RS12475	0.73	-1.2
2,845,773	-		BPHYT_RS12475	0.83	+2.3
2,845,777	+		BPHYT_RS12475	0.83	+0.7
2,845,777	+		BPHYT_RS12475	0.83	+5.9
2,846,365	+		BPHYT_RS12480	0.10	-0.1
2,846,383	+				+2.4
2,846,492	-		BPHYT_RS12480	0.20	+1.1
2,846,695	-		BPHYT_RS12480	0.35	-0.4
2,846,695	-		BPHYT_RS12480	0.35	-0.1
2,846,834	-		BPHYT_RS12480	0.45	-0.4
2,847,222	+		BPHYT_RS12480	0.73	-0.9
2,847,896	+		BPHYT_RS12485	0.62	+0.1
2,847,897	-		BPHYT_RS12485	0.62	+0.1
2,847,995	+		BPHYT_RS12485	0.80	+0.1
2,847,996	-		BPHYT_RS12485	0.80	-1.3
2,848,010	+		BPHYT_RS12485	0.83	+1.3
2,848,010	+		BPHYT_RS12485	0.83	-2.1
2,848,067	+				-0.2
2,848,068	-				+0.5
2,848,120	-				-0.5
2,848,132	-				+0.5
2,848,133	+				-0.2
2,848,133	+				-0.6
2,848,134	-				-0.9
2,848,134	-				-0.4
2,848,134	-				-0.9
2,848,134	-				+1.1
2,848,421	+		BPHYT_RS12490	0.23	-0.3
2,848,422	-		BPHYT_RS12490	0.23	+0.8