Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS12465

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
2,840,155	+		BPHYT_RS12460	0.35	-1.9
2,840,155	+		BPHYT_RS12460	0.35	+1.8
2,840,155	+		BPHYT_RS12460	0.35	-0.5
2,840,155	+		BPHYT_RS12460	0.35	-1.7
2,840,155	+		BPHYT_RS12460	0.35	-0.5
2,840,155	+		BPHYT_RS12460	0.35	-0.2
2,840,156	-		BPHYT_RS12460	0.35	-0.1
2,840,214	-		BPHYT_RS12460	0.42	+1.1
2,840,215	+		BPHYT_RS12460	0.43	-1.3
2,840,235	-		BPHYT_RS12460	0.45	+0.3
2,840,712	-				+0.4
2,840,722	-				-0.2
2,840,878	-				-4.4
2,840,936	+				-0.7
2,841,109	+				-0.2
2,841,383	+		BPHYT_RS12465	0.36	-0.2
2,841,383	+		BPHYT_RS12465	0.36	+0.4
2,841,383	+		BPHYT_RS12465	0.36	-3.7
2,841,384	-		BPHYT_RS12465	0.36	+0.1
2,841,989	-				+2.4
2,842,014	-				-1.0
2,842,112	+				-0.7
2,842,112	+				-0.8
2,842,113	-				-0.9
2,842,247	+		BPHYT_RS12470	0.12	-0.7
2,842,248	-		BPHYT_RS12470	0.12	-0.6
2,842,306	+		BPHYT_RS12470	0.16	-0.2
2,842,380	-		BPHYT_RS12470	0.22	-0.9
2,842,425	-		BPHYT_RS12470	0.25	-1.2
2,842,631	+		BPHYT_RS12470	0.41	+0.1
2,842,631	+		BPHYT_RS12470	0.41	-0.5
2,842,632	-		BPHYT_RS12470	0.41	-0.2
2,842,728	-		BPHYT_RS12470	0.49	-0.4
2,842,728	-		BPHYT_RS12470	0.49	-0.4