Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS12355

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
2,814,840	+				+0.3
2,814,865	+				+0.9
2,815,088	-		BPHYT_RS12335	0.14	+0.5
2,815,165	-				+0.5
2,817,359	-				-0.8
2,817,359	-				+0.3
2,817,360	+				-0.8
2,817,379	-				+0.5
2,817,492	+				-0.5
2,817,492	+				-1.2
2,817,492	+				-0.1
2,817,492	+				-0.5
2,817,493	-				-0.2
2,817,493	-				-1.3
2,817,520	+				-0.7
2,817,521	-				-0.1
2,817,734	+		BPHYT_RS12360	0.11	-0.2
2,817,734	+		BPHYT_RS12360	0.11	+0.1
2,817,735	-		BPHYT_RS12360	0.11	-0.7
2,817,735	-		BPHYT_RS12360	0.11	-2.3
2,817,939	+		BPHYT_RS12360	0.32	+1.0
2,817,940	-		BPHYT_RS12360	0.32	-0.8
2,817,940	-		BPHYT_RS12360	0.32	+0.1
2,818,066	-		BPHYT_RS12360	0.45	-0.2
2,818,176	-		BPHYT_RS12360	0.57	+0.7