Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS12065

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
2,749,734	+				-0.7
2,750,078	+		BPHYT_RS12060	0.44	-2.4
2,750,078	+		BPHYT_RS12060	0.44	+3.5
2,750,521	+				-0.3
2,750,522	-				+0.6
2,750,531	+				+0.5
2,751,120	+		BPHYT_RS12065	0.54	-0.3
2,751,120	+		BPHYT_RS12065	0.54	-0.9
2,751,121	-		BPHYT_RS12065	0.54	-0.5
2,751,404	+				+0.2
2,751,404	+				-0.9
2,751,404	+				-0.4
2,751,404	+				+0.9
2,751,448	+				+0.2
2,751,449	-				+0.3
2,751,535	+				-0.1
2,751,536	-				-0.2
2,752,040	+		BPHYT_RS12070	0.65	-0.2
2,752,040	+		BPHYT_RS12070	0.65	+0.2
2,752,100	-		BPHYT_RS12070	0.73	+0.0
2,752,276	-				-2.4
2,752,276	-				-0.0