Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS12060

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
2,748,752	+		BPHYT_RS12055	0.81	-2.4
2,748,753	-		BPHYT_RS12055	0.81	-2.4
2,748,753	-		BPHYT_RS12055	0.81	-4.9
2,748,753	-		BPHYT_RS12055	0.81	-5.1
2,749,165	+				-1.2
2,749,165	+				-6.2
2,749,165	+				-0.8
2,749,166	-				-2.2
2,749,166	-				-3.2
2,749,166	-				-5.0
2,749,166	-				-3.1
2,749,166	-				-1.6
2,749,166	-				-5.3
2,749,169	+				-3.2
2,749,169	+				-3.5
2,749,170	-				-4.0
2,749,170	-				-6.4
2,749,170	-				-0.9
2,749,170	-				-3.3
2,749,170	-				-4.2
2,749,170	-				-4.7
2,749,170	-				-5.0
2,749,170	-				-3.0
2,749,176	+				-1.7
2,749,206	+				-5.0
2,749,206	+				-3.9
2,749,206	+				-3.0
2,749,207	-				-4.5
2,749,207	-				-5.0
2,749,207	-				-4.2
2,749,207	-				-2.7
2,749,207	-				-2.8
2,749,279	+				-2.1
2,749,353	+				-2.4
2,749,483	-				+0.0
2,749,487	+				-0.6
2,749,734	+				-0.7
2,750,078	+		BPHYT_RS12060	0.44	-2.4
2,750,078	+		BPHYT_RS12060	0.44	+3.5
2,750,521	+				-0.3
2,750,522	-				+0.6
2,750,531	+				+0.5
2,751,120	+		BPHYT_RS12065	0.54	-0.3
2,751,120	+		BPHYT_RS12065	0.54	-0.9
2,751,121	-		BPHYT_RS12065	0.54	-0.5
2,751,404	+				+0.2
2,751,404	+				-0.9
2,751,404	+				-0.4
2,751,404	+				+0.9
2,751,448	+				+0.2
2,751,449	-				+0.3
2,751,535	+				-0.1
2,751,536	-				-0.2