Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS12005

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
2,732,094	+				-0.0
2,732,108	+				-0.1
2,732,255	+				-0.9
2,732,380	+				-0.4
2,732,381	-				-0.6
2,732,688	+				+0.4
2,732,782	+				-0.5
2,732,783	-				-1.8
2,732,783	-				-0.0
2,733,046	+		BPHYT_RS12005	0.12	-2.2
2,733,049	-		BPHYT_RS12005	0.12	+2.0
2,733,371	+		BPHYT_RS12005	0.18	-1.0
2,733,382	-		BPHYT_RS12005	0.18	-1.9
2,733,465	-		BPHYT_RS12005	0.19	+0.1
2,733,465	-		BPHYT_RS12005	0.19	-0.6
2,734,101	+		BPHYT_RS12005	0.31	+0.3
2,734,102	-		BPHYT_RS12005	0.31	+0.5
2,734,644	-		BPHYT_RS12005	0.41	-0.0
2,734,644	-		BPHYT_RS12005	0.41	+0.5
2,734,665	+		BPHYT_RS12005	0.41	+0.4
2,734,850	-		BPHYT_RS12005	0.45	-1.6
2,735,134	+		BPHYT_RS12005	0.50	-0.2
2,735,174	+		BPHYT_RS12005	0.50	-1.3
2,735,175	-		BPHYT_RS12005	0.51	-0.7
2,735,176	+		BPHYT_RS12005	0.51	-0.2
2,735,176	+		BPHYT_RS12005	0.51	-0.1
2,735,176	+		BPHYT_RS12005	0.51	+0.5
2,735,177	-		BPHYT_RS12005	0.51	+0.3
2,735,177	-		BPHYT_RS12005	0.51	-1.1
2,735,216	+		BPHYT_RS12005	0.51	+0.4
2,735,233	-		BPHYT_RS12005	0.52	-1.2
2,735,298	-		BPHYT_RS12005	0.53	+1.0
2,735,298	-		BPHYT_RS12005	0.53	-0.2
2,735,405	+		BPHYT_RS12005	0.55	+0.7
2,735,414	+		BPHYT_RS12005	0.55	+0.2
2,735,414	+		BPHYT_RS12005	0.55	-0.4
2,735,501	+		BPHYT_RS12005	0.56	-0.7
2,735,502	-		BPHYT_RS12005	0.56	-0.1
2,735,545	+		BPHYT_RS12005	0.57	+0.9
2,735,546	-		BPHYT_RS12005	0.57	+0.0
2,735,630	-		BPHYT_RS12005	0.59	+0.2
2,735,681	+		BPHYT_RS12005	0.60	-0.1
2,735,681	+		BPHYT_RS12005	0.60	+2.6
2,735,708	+		BPHYT_RS12005	0.60	-0.4
2,735,709	-		BPHYT_RS12005	0.60	+0.6
2,735,723	+		BPHYT_RS12005	0.60	+0.3
2,735,723	+		BPHYT_RS12005	0.60	-0.1
2,735,723	+		BPHYT_RS12005	0.60	+0.5
2,736,072	-		BPHYT_RS12005	0.67	+0.6
2,736,092	+				+1.5
2,736,128	+		BPHYT_RS12005	0.68	+0.2
2,736,512	+		BPHYT_RS12005	0.75	-0.3
2,736,512	+		BPHYT_RS12005	0.75	+0.0
2,736,587	+		BPHYT_RS12005	0.76	-1.4
2,736,587	+		BPHYT_RS12005	0.76	-0.8
2,736,588	-		BPHYT_RS12005	0.76	-0.9
2,736,588	-		BPHYT_RS12005	0.76	+1.5
2,736,588	-		BPHYT_RS12005	0.76	-0.2
2,736,662	+		BPHYT_RS12005	0.77	+0.7
2,736,761	+		BPHYT_RS12005	0.79	+3.8
2,736,761	+		BPHYT_RS12005	0.79	-0.2
2,736,762	-		BPHYT_RS12005	0.79	+0.8
2,736,927	+		BPHYT_RS12005	0.82	+0.4
2,737,029	-		BPHYT_RS12005	0.84	-0.9
2,737,029	-		BPHYT_RS12005	0.84	-0.2
2,737,114	-		BPHYT_RS12005	0.86	+1.0
2,737,308	+		BPHYT_RS12005	0.89	+0.4
2,737,308	+		BPHYT_RS12005	0.89	+0.6
2,737,308	+		BPHYT_RS12005	0.89	+6.1
2,737,752	-				-1.7
2,737,801	+				+1.1
2,737,982	+				-0.4
2,738,021	-				-0.3
2,738,028	-				-0.6
2,738,074	+				+0.4
2,738,074	+				+1.3
2,738,075	-				-0.3
2,738,075	-				+0.3
2,738,108	-				-0.4