Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS11960

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
2,719,904	+		BPHYT_RS11955	0.31	+1.0
2,720,637	-		BPHYT_RS11955	0.87	+0.4
2,722,057	-		BPHYT_RS11960	0.80	+1.5
2,722,751	-				+0.5
2,722,822	-				-0.1
2,722,824	-				-0.5
2,722,839	+				-0.4
2,723,163	-				+0.3
2,723,163	-				+1.1
2,723,318	+				+0.4
2,723,318	+				-1.0
2,723,321	+				+0.7
2,723,322	-				+0.4
2,723,355	+				+0.7