Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS11515

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
2,618,790	-				-0.8
2,618,790	-				+0.6
2,618,790	-				-1.3
2,618,816	-				-0.1
2,618,816	-				-0.4
2,618,837	+				-0.8
2,618,895	-				+1.4
2,619,083	-				+1.3
2,619,086	+				+1.0
2,619,087	-				+0.5
2,619,254	+		BPHYT_RS11515	0.21	-0.1
2,619,255	-		BPHYT_RS11515	0.21	+0.7
2,619,664	+		BPHYT_RS11515	0.65	+0.8
2,619,664	+		BPHYT_RS11515	0.65	+0.1
2,619,770	+		BPHYT_RS11515	0.77	+4.4
2,619,771	-		BPHYT_RS11515	0.77	+1.4
2,619,825	-		BPHYT_RS11515	0.82	+1.0
2,619,825	-		BPHYT_RS11515	0.82	+0.6
2,619,890	+		BPHYT_RS11515	0.89	+1.5
2,619,891	-		BPHYT_RS11515	0.89	+1.6
2,620,159	+				+1.1
2,620,161	+				+0.9
2,620,162	-				+0.5
2,620,607	+		BPHYT_RS11520	0.40	+0.4
2,620,608	-		BPHYT_RS11520	0.40	-0.5
2,620,676	-		BPHYT_RS11520	0.45	-0.5