Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS11390

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
2,586,742	+		BPHYT_RS11385	0.52	+0.8
2,586,774	+		BPHYT_RS11385	0.56	-0.3
2,586,927	+		BPHYT_RS11385	0.73	-1.1
2,586,988	+		BPHYT_RS11385	0.80	+1.2
2,587,001	+		BPHYT_RS11385	0.82	+0.1
2,587,002	-		BPHYT_RS11385	0.82	+0.5
2,587,093	+				+0.7
2,587,354	+				+0.0
2,587,727	-				-2.3
2,587,729	-				-4.8
2,587,812	+		BPHYT_RS11390	0.11	-2.3
2,587,813	-		BPHYT_RS11390	0.11	-3.5
2,587,881	+		BPHYT_RS11390	0.14	-3.0
2,588,050	-		BPHYT_RS11390	0.21	-0.9
2,588,154	+		BPHYT_RS11390	0.25	-3.3
2,588,377	+		BPHYT_RS11390	0.34	+0.1
2,588,377	+		BPHYT_RS11390	0.34	-1.2
2,588,377	+		BPHYT_RS11390	0.34	-1.4
2,588,378	-		BPHYT_RS11390	0.34	-3.7
2,588,378	-		BPHYT_RS11390	0.34	-2.4
2,588,378	-		BPHYT_RS11390	0.34	-3.3
2,588,452	-		BPHYT_RS11390	0.37	-2.1
2,588,905	+		BPHYT_RS11390	0.55	-3.1
2,589,070	-		BPHYT_RS11390	0.61	-5.1
2,589,070	-				+2.4
2,589,085	-		BPHYT_RS11390	0.62	-5.5
2,589,085	-		BPHYT_RS11390	0.62	-2.2
2,589,093	+		BPHYT_RS11390	0.62	-0.6
2,589,123	+		BPHYT_RS11390	0.63	-3.2
2,589,123	+		BPHYT_RS11390	0.63	-2.0
2,589,210	+		BPHYT_RS11390	0.67	-0.9
2,589,211	-		BPHYT_RS11390	0.67	-2.7
2,589,285	+		BPHYT_RS11390	0.70	-3.0
2,589,409	-		BPHYT_RS11390	0.75	-2.7
2,589,423	+		BPHYT_RS11390	0.75	-4.5
2,589,424	-		BPHYT_RS11390	0.75	-2.4
2,589,487	-		BPHYT_RS11390	0.78	-0.6
2,589,501	+		BPHYT_RS11390	0.79	-3.9
2,589,648	+		BPHYT_RS11390	0.84	-4.3
2,589,757	+		BPHYT_RS11390	0.89	-2.0
2,589,758	-		BPHYT_RS11390	0.89	-2.7
2,589,760	-		BPHYT_RS11390	0.89	-1.1
2,589,975	+				-2.2
2,590,045	+				-1.3
2,590,195	+				-1.0
2,590,195	+				-0.8
2,590,431	+				+1.0
2,590,452	+				-0.7
2,590,514	+				+0.4
2,590,514	+				+1.5
2,590,515	-				-0.3
2,590,528	-				+1.8
2,590,534	-				-1.7
2,590,890	+		BPHYT_RS11395	0.56	-0.7
2,590,891	-		BPHYT_RS11395	0.56	-0.2