Strain Fitness in Burkholderia phytofirmans PsJN around BPHYT_RS11110

Experiment: Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Plant=switchgrass; PlantTreatment=high_phosphate; Sample=rhizosphere; GrowthSubstrate=Agar_0.5%; Collection=LB_with_kan50; Time=3weeks; NumberPlantsPooled=10
2,523,540	+		BPHYT_RS11105	0.40	+0.2
2,523,544	+		BPHYT_RS11105	0.41	-0.7
2,524,647	+		BPHYT_RS11110	0.10	-0.9
2,524,907	-		BPHYT_RS11110	0.24	+0.9
2,525,252	-		BPHYT_RS11110	0.41	+3.9
2,525,252	-		BPHYT_RS11110	0.41	-1.4
2,525,794	-		BPHYT_RS11110	0.68	+1.6
2,525,878	-		BPHYT_RS11110	0.73	+0.9
2,526,177	+		BPHYT_RS11110	0.88	+1.0
2,526,321	+				+0.8
2,526,429	-				-0.2
2,527,015	-				-1.2
2,527,020	+				-0.0